D functionality prediction by protein inter-residue length patterns. B…
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D operate prediction by protein inter-residue distance designs. BMC Genomics 2011 12(Suppl 4):S12.
Mukherjee et al. Standards in Genomic Sciences 2015, ten:8 http://www.standardsingenomics.com/content/10/1/EXTENDED GENOME REPORTOpen AccessHigh good quality draft genome sequence and analysis of Pontibacter roseus style strain SRC-1T (DSM 17521T) isolated from muddy waters of the drainage system in Chandigarh, IndiaSupratim Mukherjee1, PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/11011031 Alla Lapidus2,3, Nicole Shapiro1, Jan-Fang Cheng1, James Han1, TBK Reddy1, Marcel Huntemann1, Natalia Ivanova1, Natalia Mikhailova1, Amy Chen5, Krishna Palaniappan5, Stefan Spring4, Markus G er4, Victor Markowitz5, Tanja Woyke1, Brian J Tindall4, Hans-Peter Klenk4, Nikos C Kyrpides1,6 and Amrita Pati1*AbstractPontibacter roseus is really a member of genus Pontibacter family members Cytophagaceae, class Cytophagia. When the sort species of your genus Pontibacter actiniarum was isolated in 2005 from a maritime surroundings, subsequent species of the exact genus have Carbonic Anhydrase one, Human (His) been discovered in various sorts of habitats starting from seawater, sediment, desert soil, rhizosphere, contaminated sites, photo voltaic saltern and muddy drinking water. Listed here we describe the attributes of Pontibacter roseus strain SRC-1T alongside with its complete genome sequence and annotation from a lifestyle of DSM 17521T. The four,581,480 bp extended draft genome is made up of 12 scaffolds with 4,003 protein-coding and fifty RNA genes which is a component of Genomic Encyclopedia of Type Strains: KMG-I project. Keywords and phrases: Aerobic, Gram-negative, Non-motile, Obligate aerobe, Halotolerant, Menaquinone, GEBA, KMG-IIntroduction The genus Pontibacter was first described by Nedashkovskaya et al. [1] exactly where they discovered and explained a menaquinone manufacturing strain isolated from sea anemones. Quite a few new species on the similar genus happen to be described during the literature due to the fact then. In addition to Pontibacter roseus, you will discover eighteen species with validly revealed names belonging to Pontibacter genus as of crafting this manuscript. Members of genus Pontibacter which include P. roseus, is of curiosity for genomic analysis due to their skill to synthesize and use menaquinone-7 (MK-7) as the key respiratory quinone too concerning aid purposeful genomics research inside of the team. Pressure SRC-1T (= DSM 17521 = CCTCC AB 207222 = CIP 109903 = MTCC 7260) is the sort strain of Pontibacter roseus, which was isolated from muddy drinking water from an occasional drainage process of a residential area in Chandigarh, India [2]. P. roseus SRC-1T was initially reported for being Effluviibacter roseus SRC-1T primarily* Correspondence: apati@lbl.gov one DOE Joint Genome Institute, Walnut Creek, California, Usa Whole list of author info is obtainable for the end on the articledue to its non-motile character and fatty acid composition [2]. Nevertheless, subsequent evaluation of its fatty acid profile was revealed to become additional `Pontibacter-like' and gliding motility was noticed for being variable in other Pontibacter species [3]. Further more, its DNA G + C content, which was initially described as 59 mol [2], was also emended to be fifty two.0?2.3 mol [3], a value additional consultant of members of your genus Pontibacter. As a result, it absolutely was reclassified as Pontibacter roseus SRC-1T [3]. Right here we current a summary classification and options for Pontibacter roseus SRC-1T, alongside while using the genome sequence and annotation of DSM 17521T.Organism informationClassification and featuresP. roseus SRC-1T cells are non-motile, stain Gramnegative, tend not to form spores and they are rod-shaped around.
Mukherjee et al. Standards in Genomic Sciences 2015, ten:8 http://www.standardsingenomics.com/content/10/1/EXTENDED GENOME REPORTOpen AccessHigh good quality draft genome sequence and analysis of Pontibacter roseus style strain SRC-1T (DSM 17521T) isolated from muddy waters of the drainage system in Chandigarh, IndiaSupratim Mukherjee1, PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/11011031 Alla Lapidus2,3, Nicole Shapiro1, Jan-Fang Cheng1, James Han1, TBK Reddy1, Marcel Huntemann1, Natalia Ivanova1, Natalia Mikhailova1, Amy Chen5, Krishna Palaniappan5, Stefan Spring4, Markus G er4, Victor Markowitz5, Tanja Woyke1, Brian J Tindall4, Hans-Peter Klenk4, Nikos C Kyrpides1,6 and Amrita Pati1*AbstractPontibacter roseus is really a member of genus Pontibacter family members Cytophagaceae, class Cytophagia. When the sort species of your genus Pontibacter actiniarum was isolated in 2005 from a maritime surroundings, subsequent species of the exact genus have Carbonic Anhydrase one, Human (His) been discovered in various sorts of habitats starting from seawater, sediment, desert soil, rhizosphere, contaminated sites, photo voltaic saltern and muddy drinking water. Listed here we describe the attributes of Pontibacter roseus strain SRC-1T alongside with its complete genome sequence and annotation from a lifestyle of DSM 17521T. The four,581,480 bp extended draft genome is made up of 12 scaffolds with 4,003 protein-coding and fifty RNA genes which is a component of Genomic Encyclopedia of Type Strains: KMG-I project. Keywords and phrases: Aerobic, Gram-negative, Non-motile, Obligate aerobe, Halotolerant, Menaquinone, GEBA, KMG-IIntroduction The genus Pontibacter was first described by Nedashkovskaya et al. [1] exactly where they discovered and explained a menaquinone manufacturing strain isolated from sea anemones. Quite a few new species on the similar genus happen to be described during the literature due to the fact then. In addition to Pontibacter roseus, you will discover eighteen species with validly revealed names belonging to Pontibacter genus as of crafting this manuscript. Members of genus Pontibacter which include P. roseus, is of curiosity for genomic analysis due to their skill to synthesize and use menaquinone-7 (MK-7) as the key respiratory quinone too concerning aid purposeful genomics research inside of the team. Pressure SRC-1T (= DSM 17521 = CCTCC AB 207222 = CIP 109903 = MTCC 7260) is the sort strain of Pontibacter roseus, which was isolated from muddy drinking water from an occasional drainage process of a residential area in Chandigarh, India [2]. P. roseus SRC-1T was initially reported for being Effluviibacter roseus SRC-1T primarily* Correspondence: apati@lbl.gov one DOE Joint Genome Institute, Walnut Creek, California, Usa Whole list of author info is obtainable for the end on the articledue to its non-motile character and fatty acid composition [2]. Nevertheless, subsequent evaluation of its fatty acid profile was revealed to become additional `Pontibacter-like' and gliding motility was noticed for being variable in other Pontibacter species [3]. Further more, its DNA G + C content, which was initially described as 59 mol [2], was also emended to be fifty two.0?2.3 mol [3], a value additional consultant of members of your genus Pontibacter. As a result, it absolutely was reclassified as Pontibacter roseus SRC-1T [3]. Right here we current a summary classification and options for Pontibacter roseus SRC-1T, alongside while using the genome sequence and annotation of DSM 17521T.Organism informationClassification and featuresP. roseus SRC-1T cells are non-motile, stain Gramnegative, tend not to form spores and they are rod-shaped around.
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